Funding By:
Minimal medium composition (1 L): 22.4 mM NH4Cl, 0.8 mM MgSO4,
0.5 mM CaCl2, 15 mM potassium phosphate buffer, pH 6.7, 1 ml/1 liter
vitamin solution (100 mg cyanocobalamin, 300 mg pyridoxamine-2HCl, 100 mg calcium-D(+)-pantothenate,
200 mg thiamindichloride, 200 mg nicotinic acid, 80 mg 4-aminobenzoic acid, 20
mg D(+)-biotin), 10 ml/liter trace element solution (500 mg ethylenediamine
tetraacetic acid (EDTA, disodium salt), 300 mg FeSO4 ×
7H2O, 3 mg MnCl2 × 4H2O, 5
mg CoCl2 × 6H2O, 1
mg CuCl2 × 2H2O, 2
mg NiCl2 × 6H2O, 3
mg Na2MoO4 × 2H2O, 5
mg ZnSO4 × 7H2O, and
2 mg H3BO3 per liter, pH 3) and 10 mM of either sodium
succinate or sodium lactate.
The following table, assembled by Jordan Allen and Birgit Alber, lists those mutants for which the transposon
insertion has been mapped and a stock culture is available upon request.
This table is also available as an Excel spreadsheet here.
Mutant | Minimal Media | Mutated Gene/Intergenic Region | Sequence insertion Site | Chromosome/Plasmid Tn Location | RSP | Primer | Date Obtained1 | Current Box Position |
Sp11-32-212 | D/L lactate | hypothetical protein | (0056536-0056544) | chromosome 1 | 1471 | 13-2, 17-1 | 6/23/2011 | P Box2 I7 |
SP10-29-4 | D/L lactate | oligopeptide transporter, fused ATPase subunits | 0063798 | chromosome 1 | 1478 | 17-1 | 5/27/2010 | P Box1 A1 |
Au10TR-25-35 | succinate | GAF domain-containing protein | 0088228 | chromosome 1 | 1502 | 17-1 | 11/30/2010 | P Box2 E4 |
Au12-332-11-45 | D/L lactate | ribosomal large subunit pseudouridine synthase A | 0089655 | chromosome 1 | 1506 | 17-1 | 12/13/2012 | P Box3 C3 |
Au10MW-21-65 | succinate | HNS family histone-like protein | 0104180 | chromosome 1 | 1517 | 17-1 | 11/30/2010 | P Box2 G2 |
Au12-316-7-pig | D/L lactate | PrrA (RegA), response regulator involved in oxygen regulation of photosynthesis genes | 0105027 | chromosome 1 | 1518 | 17-1 | 12/13/2012 | P Box3 G4 |
Au10TR-22-88 | succinate | transthyretin-like protein | 0146035 | chromosome 1 | 1555 | 17-1 | 11/30/2010 | P Box2 C5 |
Au12-316-14-141(pig) | D/L lactate | AppA, BLUF, antirepressor of ppsR, sensor of blue light | 0155442 | chromosome 1 | 1565 | 17-1 | 12/13/2012 | P Box3 F4 |
Au12-316-17-251(pig) | D/L lactate | AppA, BLUF, antirepressor of ppsR, sensor of blue light | 0156313 | chromosome 1 | 1565 | 17-1 | 12/13/2012 | P Box3 A4 |
Sp11-21-87 | D/L lactate | Chemotaxis protein, CheW2 | 0176815 | chromosome 1 | 1585 | 17-1 | 6/23/2011 | P Box2 F6 |
Au12-332-17-124 | D/L lactate | Chemotaxis protein, CheW2 | 0176853 | chromosome 1 | 1585 | 17-1 | 12/13/2012 | P Box1 D3 |
Sp11-35-40 | D/L lactate | hypothetical protein | 0195032 | chromosome 1 | 6009 | 17-1 | 6/23/2011 | P Box2 G6 |
Sp10-18-MF | D/L lactate | conserved hypothetical protein | 0241614-0241624 | chromosome 1 | 1648 | 13-2, 17-1 | 5/27/2010 | P Box3 A1 |
Au10MW-29-11 | succinate | hypothetical protein | 0248309 | chromosome 1 | 1654 | 17-1 | 11/30/2010 | P Box2 C2 |
Au11-30-101 | D/L lactate | RelA/SpoT family protein | 0260844 | chromosome 1 | 1670 | 17-1 | 12/12/2011 | P Box3 A1 |
Au12-332-18-247 | D/L lactate | RelA/SpoT family protein | 0260932 | chromosome 1 | 1670 | 17-1 | 12/13/2012 | P Box3 G3 |
Au12-332-1-132 | D/L lactate | RelA/SpoT family protein | 0261677 | chromosome 1 | 1670 | 17-1 | 12/13/2012 | P Box3 H3 |
Au11-24-50 | D/L lactate | n/a | 0275521 (estimate) | chromosoma 1 | n/a | iPCR | 12/12/2011 | P Box3 G1 |
SP10-11-A3 | D/L lactate | possible acyltransferase (365 aa) | 0277757-277766 | chromosome 1 | 1688 | 13-2, 17-1 | 5/27/2010 | P Box1 C1 |
Au12-316-3-pig | D/L lactate | putative transcriptional regulatory protein (LacI family) | 0370075 | chromosome 1 | 1785 | 17-1 | 12/13/2012 | P Box3 D5 |
Sp11-28-9 | D/L lactate | hypothetical protein | 0393762-0393771 | chromosome 1 | 6019 | 13-2, 17-1 | 6/13/2011 | P Box2 H6 |
Au09MW-2-89 | succinate | Mg chetalase-related protein | 0406029 | chromosome 1 | 1539 | 13-2 | 11/30/2009 | P Box1 D1 |
Sp11-6-87 | D/L lactate | Zinc-containing alcohol dehydrogenase | 0415903 | chromosome 1 | 1824 | 17-1 | 6/23/2011 | P Box2 E5 |
Au10TR-14-142 | succinate | TPR repeat-containing protein | 0500304 | chromosome 1 | 1902 | 17-1 | 11/30/2010 | P Box2 A4 |
SP10-33-36 | D/L lactate | intergenic region between AsnC family transcriptional regulator and cytochrome P450 hydroxylase | 0543649-543659 | chromosome 1 | n/a | 13-2, 17-1 | 5/27/2010 | P Box1 E1 |
Au10TR-02-03 | succinate | hypothetical protein | 0554801 | chromosome 1 | 1962 | 17-1 | 11/30/2010 | P Box2 B4 |
Au09TR-09-40 (=Au09MW-09-42) | succinate | intergenic region between ATPase and hypothetical protein | 0639371-639383 | chromosome 1 | 2044-2045 | 13-2, 17-1 | 11/30/2009 | P Box1 F1 |
Au09MW-09-42 (=Au09TR-09-40) | succinate | intergenic region between ATPase and hypothetical protein | 0639371-639383 | chromosome 1 | 2044-2045 | 13-2, 17-1 | 11/30/2009 | P Box1 G1 |
SP10-7-4 | D/L lactate | hypothetical protein | 0644741 | chromosome 1 | 2049 | 17-1 | 05/27/2010 | P Box1 H1 |
SP10-19-3 | D/L lactate | conserved hypothetical protein | 0651428 | chromosome 1 | 2058 | 17-1 | 05/27/2010 | P Box1 I1 |
Au09MW-28-52 | succinate | pyruvate carboxylase (PycA) | 0685258-685267 | chromosome 1 | 2090 | 13-2, 17-1 | 11/30/2009 | P Box1 A2 |
Au09TR-23-48 | succinate | pyruvate carboxylase (PycA) | 0685308-685319 | chromosome 1 | 2090 | 13-2, 17-1 | 11/30/2009 | P Box1 B2 |
Au09TR-32-90 | succinate | pyruvate carboxylase (PycA) | 0685750 (estimate) | chromosome 1 | 2090 | iPCR | 11/30/2009 | P Box1 C2 |
Au09TR-09-187 | succinate | pyruvate carboxylase (PycA) | 0686061-686069 | chromosome 1 | 2090 | 13-2, 17-1 | 11/30/2009 | P Box1 D2 |
Au09TR-17-143 | succinate | pyruvate carboxylase (PycA) | 0686692-686701 | chromosome 1 | 2090 | 13-2, 17-1 | 11/30/2009 | P Box1 E2 |
Au09TR-34-134 | succinate | pyruvate carboxylase (PycA) | 0686932-686944 | chromosome 1 | 0290 | 13-2, 17-1 | 11/30/2009 | P Box1 F2 |
Au09MW-33-186 | succinate | small conductance mechanosensitive ion channel | 0750915 (estimate) | chromosome 1 | 2148 | iPCR | 11/30/2009 | P Box1 G2 |
Au09MW-19-44 | succinate | major facilitator superfamily multidrug-efflux transporter | 0795368-795376 | chromosome 1 | 2187 | 13-2, 17-1 | 11/30/2009 | P Box1 H2 |
Au09TR-39-86 | succinate | hypothetical protein | 0801678-801687 | chromosome 1 | 6041 | 13-2, 17-1 | 11/30/2009 | P Box1 I2 |
Au11-44-29 | D/L lactate | FadJ enoyl-CoA hydratase/3-OHacyl DH/3-OHbutyryl-CoA epimerase | 0810169 | chromosome 1 | 2196 | 17-1 | 12/12/2011 | P Box2 D9 |
Sp11-28-160 | D/L lactate | MerR family transcriptional regulator | 0815944-0815956 | chromosome 1 | 2201 | 13-2, 17-1 | 6/13/2011 | P Box2 I6 |
Au09MW-20-156 | succinate | hypothetical protein | 0852943 (estimate) | chromosome 1 | 2235 | iPCR | 11/30/2009 | P Box1 A3 |
SP10-7-11 | D/L lactate | long chain fatty acid-CoA ligase (629 aa) | 0873893-873901 | chromosome 1 | 2255 | 13-2, 17-1 | 5/27/2010 | P Box1 C3 |
SP10-7-21 | D/L lactate | antifreeze protein, type 1 (ydjI; 369 aa) | 0878371-878380 | chromosome 1 | 2261 | 13-2, 17-1 | 5/27/2010 | P Box1 B3 |
Au12-316-15-96 | D/L lactate | putative anaerobic phenyllactate CoA ligase | 0891467 | chromosome 1 | 2274 | 17-1 | 12/13/2012 | P Box3 D4 |
Au10TR-8-105 | succinate | branched chain amino acid ABC transporter ATPase | 0892956 | chromosome 1 | 2274 | 17-1 | 11/30/2010 | P Box2 C4 |
Au11-40-189 | D/L lactate | putative ATP-helicase, MgpS | 1052712 | chromosome 1 | 2422 | 17-1 | 12/12/2011 | P Box2 G9 |
Au11-39-200 | D/L lactate | (glutathione-reg. K+ efflux protein KefB) | 1059208 (estimate) | chromosome 1 | n/a | iPCR | 12/12/2011 | P Box2 H9 |
Au10TR-3-57 | succinate | glutathione-dependent formaldehyde-activating enzyme | 1219729 | chromosome 1 | 2575 | 17-1 | 11/30/2010 | P Box2 C1 |
Au12-332-8-pig | D/L lactate | xoxF methanol dehydrogenase | 1222638 | chromosome 1 | 2578 | 17-1 | 12/13/2012 | P Box1 F6 |
SP10-11-81 | D/L lactate | intergenic region between hypothetical proteins | 1411640-1411649 | chromosome 1 | 2765-6070 | 13-2, 17-1 | 05/27/2010 | P Box1 E3 |
Au12-332-5-p | D/L lactate | multidrug/cation efflux pump, RND superfamily | 1514717 | chromosome 1 | 2803 | 17-1 | 12/13/2012 | P Box1 A7 |
Au10TR-34-110 | succinate | tellurite resistance protein | 1537079 | chromosome 1 | 2869 | 17-1 | 11/30/2010 | P Box2 D4 |
Au09MW-22-193 | succinate | putative site-specific recombinase | 1705707 (estimate) | chromosome 1 | 0003 | iPCR | 11/30/2009 | P Box1 F3 |
Au12-316-20-95 | D/L lactate | intergenic | 1720793 | chromosme 1 | n/a | 17-1 | 12/13/2012 | P Box3 A5 |
SP10-15-122 | D/L lactate | hypothetical protein (263 aa) | 1724183-1724191 | chromosome 1 | 6083 | 13-2, 17-1 | 05/27/2010 | P Box1 G3 |
Au10TR-30-84 | succinate | NAD(P)-dependent oxidoreductase | 1728103 | chromosome 1 | 0025 | 17-1 | 11/30/2010 | P Box2 G1 |
Au10-18-13 | succinate | n/a | 1733582 (estimate) | chromosome 1 | n/a | iPCR | 11/30/2010 | P Box3 H2 |
Au10TR-33-43 | succinate | sigma-54 dependent trancsriptional regulator | 1779096 | chromosome 1 | 0071 | 17-1 | 11/30/2010 | P Box2 H3 |
Au09TR-35-134 | succinate | sigma 54 dependent transcriptional regulator, fleQ, flagellum synthesis regulation | 1779895 (estimate) | chromosome 1 | 0071 | iPCR | 11/30/2009 | P Box1 H3 |
SP10-5-17 (=SP10-OZ69A) | D/L lactate | hypothetical protein (235 aa) | 1852875-1852889 | chromosome 1 | 0137 | 13-2, 17-1 | 5/27/2010 | P Box1 I3 |
Au09TR-2-47 | succinate | signal transduction histidine kinase | 1861895-1861904 | chromosome 1 | 0148 | 13-2, 17-1 | 11/30/2009 | P Box1 A4 |
Sp11-KS40 | D/L lactate | NAD-dep. epimerase/dehydratase | 1876555-1876563 | chromosome1 | 0160 | 13-2, 17-1 | 8/11/2011 | P Box3 B3 |
Sp11-3-37 | D/L lactate | NAD-dep. epimerase/dehydratase | 1876898 | chromosome 1 | 0160 | 17-1 | 6/23/2011 | P Box2 D5 |
SP10-4-15 | D/L lactate | lactate dehydrogenase and related DHs | 1891783 | chromosome 1 | 175 | 17-1 | 5/27/2010 | P Box1 B4 |
Au10MW-6-color2 | succinate | dihydroxy-acid dehydratase | 1893529 | chromosome 1 | 0176 | 17-1 | 11/30/2010 | P Box2 F2 |
Sp11-30-154 (pig) | D/L lactate | phage-related integrase | 1930396 | chromosome 1 | 0217 | 17-1 | 6/23/2011 | P Box2 G5 |
Sp11-36-100 | D/L lactate | plasma membrane H+-transporting 2-sector ATPase, C subunit | 1936924-1936933 | chromosome 1 | 0221 | 13-2, 17-1 | 6/13/2011 | P Box A7 |
Au09TR12-109 | succinate | plasma membrane H+-transporting 2-sector ATPase, C subunit | 1937926-1937938 | chromosome 1 | 0221 | 13-2, 17-1 | 11/30/2009 | P Box1 C4 |
Au11-22-44 | D/L lactate | n/a | 1938066 (estimate) | chromosome 1 | n/a | iPCR | 12/12/2011 | P Box3 E1 |
Au11-11-04 | D/L lactate | n/a | 1940305 (estimate) | chromosome 1 | n/a | iPCR | 12/12/2011 | P Box3 F2 |
Au10MW-18-28 | succinate | protein pufQ | 1984583 | chromosome 1 | 0259 | 17-1 | 11/30/2010 | P Box2 D1 |
Au10TR-15-63 | succinate | putative chlorophyllide reductase, BchZ subunit | 1986173 | chromosome 1 | 0260 | 17-1 | 11/30/2010 | P Box2 I1 |
Au12-316-5-50 | D/L lactate | crtE, geranylgeranyl pyrophosphate synthetase (very beginning) | 1989676 | chromosome 1 | 0265 | 17-1 | 12/13/2012 | P Box2 B4 |
Au11-5-198 | D/L lactate | farnesyl-diphosphate synthase (ctrE) | 1989967 | chromosome 1 | 0265 | 17-1 | 12/12/2011 | P Box3 D2 |
SP10-32-10 | D/L lactate | methoxyneurosporene dehydrogenase (crtD; 495 aa) | 1990714-1990723 | chromosome 1 | 0266 | 13-2, 17-1 | 5/27/2010 | P Box1 D4 |
Sp11-28-26 (pig) = Au11-47-183 | D/L lactate | methoxyneurosporene dehydrogenase (crtD; 495 aa) | 1991751 | chromosome 1 | 0266 | 17-1 | 6/13/2011 | P Box2 A3 and P Box3 I9 |
SP10-MA6-1 | D/L lactate | methoxyneurosporene dehydrogenase (crtD; 495 aa) | 1991957-1991966 | chromosome 1 | 0266 | 13-2, 17-1 | 5/27/2010 | P Box1 E4 |
Au11-16-132 (pig) | D/L lactate | (ctrI, phytoene dehydrogenase) | 1995219 (<, estimate) | chromosome 1 | n/a | iPCR | 12/12/2011 | P Box3 B2 |
Au09TR-31 (pig) | succinate | spheroidene monooxygenase, carotenoid biosynthesis | 1997193 | chromosome 1 | 0272 | 13-2 | 11/30/2009 | P Box1 F4 |
Au12-316-5-pig | D/L lactate | ctrA, spheroidene monooxygenase | 1997331 | chromosome 1 | 0272 | 17-1 | 12/13/2012 | P Box3 C4 |
Au12-316-19-pig | D/L lactate | bchG, putative bacteriochlorophyll synthase | 2004915 | chromosome 1 | 0279 | 17-1 | 12/13/2012 | P Box3 F5 |
Au12-316-23-pig | D/L lactate | bchF, 2-vinyl bacteriochlorophyllide hydratase | 2010703 | chromosome 1 | 0284 | 17-1 | 12/13/2012 | P Box3 E4 |
Au10MW-5-1 (pig) | succinate | magnesium chelatase subunit H | 2014014 | chromosome 1 | 0287 | 17-1 | 11/30/2010 | P Box2 F1 |
SP10-28-6 (pig) | D/L lactate | hydrogeobyrinic acid a,c-diamide cobalt chetalase (bchH; 1193 aa) | 2014487-2014496 | chromosome 1 | 0287 | 13-2, 17-1 | 5/27/2010 | P Box1 G4 |
Au12-316-16-235 | D/L lactate | puhA reaction center H protein | 2021393 | chromosome 1 | 0291 | 17-1 | 12/13/2012 | P Box3 E5 |
Sp11-16-91 | D/L lactate | homoserine kinase protein | 2040713-2040721 | chromosome 1 | 0311 | 13-2, 17-1 | 6/13/2011 | P Box2 D8 |
Au11-32-93 | D/L lactate | intergenic | 2043166 | chromosome 1 | n/a | 17-1 | 12/12/2011 | P Box3 D1 |
Au11-20-222 | D/L lactate | (pucA, LHIIalpha light harvesting) | 2042953 (>, estimate) | chromosome 1 | n/a | iPCR | 12/12/2011 | P Box2 C2 |
Au11-19-231 (pig) | D/L lactate | PucA, LHII, light harvesting B800/850 | 2043259 | chromosome 1 | 6356 | 17-1 | 12/12/2011 | P Box3 C1 |
Au10MW-22-pig | succinate | RarD family protein | 2093369 | chromosome 1 | 0364 | 17-1 | 11/30/2010 | P Box2 E1 |
Au12-316-25-208 | D/L lactate | hypothetical protein | 2149827 | chromosome 1 | 0414 | 17-1 | 12/13/2012 | P Box3 I5 |
Au10TR-10-51 | succinate | isocitrate dehydrogenase | 2177435 | chromosome 1 | 0446 | 17-1 | 11/30/2010 | P Box2 E3 |
SP10-MA8-34 | D/L lactate | transaldolase (219 aa) | 2299749-2299767 | chromosome 1 | 0561 | 13-2, 17-1 | 5/27/2010 | P Box1 H4 |
SP10-BA201 | D/L lactate | CDP-diacylglycerol-choline O-phosphatidyltransferase (238 aa) and intergenic region (+3 bp) | 2303048-2303059 | chromosome 1 | 0565 | 13-2, 17-1 | 5/27/2010 | P Box1 I4 |
Au11-50-207 | D/L lactate | putative exonuclease | 2312658 | chromosome 1 | 0572 | 17-1 | 12/12/2011 | P Box2 F9 |
Au10TR-06-PG2 | succinate | RNA polymerase sigma factor SigJ | 2348360 | chromosome 1 | 0607 | 17-1 | 11/30/2010 | P Box2 H1 |
Sp11-15-74 | D/L lactate | RhtB family transporter | 2351369-2351371 | chromosome 1 | 0612 | 13-5, 17-1 | 6/13/2011 | P Box 2 I8 |
SP10-MA6-5 | D/L lactate | NUDIX hydrolase | 2453344-2453353 | chromosome 1 | 0708 | 13-2, 17-1 | 05/27/2010 | P Box1 A5 |
Au10TR-29-33 | succinate | hypothetical protein | 2459108 | chromosome 1 | 0713 | 17-1 | 11/30/2010 | P Box2 I4 |
Sp11-32-40 | D/L lactate | hypothetical protein | 2477621 | chromosome 1 | 0732 | 17-1 | 6/13/2011 | P Box2 H7 |
Sp11-12-113 | D/L lactate | adenine-specific DNA methylase | 2491953-2491964 | chromosome 1 | 0748 | 13-2, 17-1 | 7/11/2011 | P Box2 E8 |
Au11-36-71 | D/L lactate | esterase/lipase/thioesterase | 2567068 | chromosome 1 | 0821 | 17-1 | 12/12/2011 | P Box3 B1 |
Au09TR-12-79 | succinate | hypothetical protein (next to putative flavoprotein) | 2582572-2582582 | chromosome 1 | 6136 | 13-2, 17-1 | 11/30/2009 | P Box1 B5 |
Au09MW-6-13 | succinate | putative transporter, Rha T family, DMT superfamily | 2627431 | chromosome 1 | 0877 | 13-2 | 11/30/2009 | P Box1 C5 |
Au09TR-07-35 | succinate | catalase | 2653252-2653265 | chromosome 1 | 0903 | 13-2, 17-1 | 11/30/2009 | P Box1 B1 |
Au10-16-64 | succinate | hypothetical protein | 2705950 | chromosome 1 | 0953 | 11/30/2010 | p Box3 A3 | |
Sp11-22-112 | D/L lactate | Na+/H+ antiporter, NhaD | 2756911-2756903 | chromosome 1 | 0998 | 13-2, 17-1 | 6/13/2011 | P Box2 C9 |
Au12-316-4-PM | D/L lactate | conserved hypothetical protein | 2785256 | chromosome 1 | 1022 | 17-1 | 12/13/2012 | P Box3 I3 |
Sp11-3-144 | D/L lactate | Peptidase family S49 | 2832475-2832466 | chromosome 1 | 1076 | 13-2, 17-1 | 8/9/2011 | P Box2 A9 |
Au09TR-19-157 | succinate | sugar/cation symporter, GPH family | 2846581 (estimate) | chromosome 1 | 1089 | iPCR | 11/30/2009 | P Box1 H5 |
Au12-332-11-180 | D/L lactate | 4Fe-4S ferredoxin, iron-sulfur cluster binding protein | 2904887 | chromosome 1 | 1143 | 17-1 | 12/13/2012 | P Box3 F3 |
Au10TR-1-27 | succinate | NADH-ubiquinone oxidoreductase | 2915309 | chromosome 1 | 1151 | 17-1 | 11/30/2010 | P Box2 G4 |
Au09T18-151 | succinate | n/a | 2931863 (estimate) | chromosome 1 | 1167 | iPCR | 11/30/2009 | P Box1 D5 |
Au10MW-31-79 | succinate | prolyl aminopeptidase | 2942582 | chromosome 1 | 1174 | 17-1 | 11/30/2010 | P Box2 A3 |
Au09MW19-42 | succinate | secreted conserved hypothetical protein | 2970001-2970010 | chromosome 1 | 1199 | 13-2, 17-1 | 11/30/2009 | P Box1 E5 |
Au10TR-5-118 | succinate | NUDIX hydrolase | 2979607 | chromosome 1 | 1208 | 17-1 | 11/30/2010 | P Box2 G3 |
SP10-18-BA | D/L lactate | ABC sugar transporter, ATPase subunit (499 aa) | 3016062-3016071 | chromosome 1 | 1247 | 13-2, 17-1 | 5/27/2010 | P Box1 F5 |
Au10MW-34-9 | succinate | hypothetical protein | 3072968 | chromosome 1 | 6154 | 17-1 | 11/30/2010 | P Box2 C3 |
Sp11-10-59 | D/L lactate | putative MotB protein | 3073686-3073687 | chromosome 1 | 1302 | 13-2, 17-1 | 6/11/2011 | P Box2 F8 |
Au12-316-20-9 | D/L lactate | flgE, putative flagellar hook protein | 3074884 | chromosome 1 | 1303 | 17-1 | 12/13/2012 | P Box3 B5 |
Au09TR-30-024 | succinate | hypothetical protein, gene cluster with flagellum biosynthesis genes | 3090075 | chromosome 1 | 1318 | 13-2 | 11/30/2009 | P Box1 G5 |
Sp11-35-169 | D/L lactate | intergenic region | 3102834-3102842 | chromosome 1 | n/a | 13-2, 17-1 | 9/8/2011 | P Box2 I8 |
SP10-22-4 | D/L lactate | transcriptional regulator, TetR family (233 aa) | 0053600-53610 | chromosome 2 | 3022 | 13-2, 17-1 | 5/27/2010 | P Box1 I5 |
Au09MW-01-229 | succinate | molybdenum cofactor biosynthesis protein (moeA) | 0086469-86477 | chromosome 2 | 3049 | 13-2, 17-1 | 11/30/2009 | P Box1 A6 |
SP10-26-1 (pig) | D/L lactate | periplasmic sensor diguanylate cyclase/phosphodiesterase | 0145334 | chromosome 2 | 3101 | 17-1 | 05/27/2010 | P Box1 C6 |
Au09MW-12-91 | succinate | putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit | 0197684 | chromosome 2 | 3147 | 13-2 | 11/30/2009 | P Box1 D6 |
Au10TR-12-1 (green) | succinate | ABC ferric siderophore transporter, inner membrane subunit | 0279538 | chromosome 2 | 3220 | 17-1 | 11/30/2010 | P Box2 A2 |
SP10-29-5 | D/L lactate | NAD-dependent deacetylase (230 aa) | 0285267-285276 | chromosome 2 | 3226 | 13-2, 17-1 | 5/27/2010 | P Box1 F6 |
Au09MW-15-23 | succinate | L-lysine 2,3-aminomutase | 0286543-286552 | chromosome 2 | 3227 | 13-2, 17-1 | 11/30/2009 | P Box1 G6 |
Au11-18-41 | D/L lactate | ABC peptide transporter, periplasmic binding protein | 0289451 | chromosome 2 | 3231 | 17-1 | 12/12/2011 | P Box3 E2 |
Sp11-2-87 | D/L lactate | acrB, cation/multidrug efflux pump | 0379697 | chromosome 2 | 3318 | 17-1 | 6/23/2011 | P Box2 E6 |
Sp11-5-119 | D/L lactate | transporter RarD family protein | 0405046-0405055 | chromosome2 | 3341 | 13-2, 17-1 | 8/9/2011 | P Box2 G8 |
Sp11-11-192 | D/L lactate | methionine synthase, 5-methyltetrahydrofolate-homocysteine methyltransferase | 0412665 | chromosome 2 | 3346 | 17-1 | 6/23/2011 | P Box2 F5 |
Au10MW-19-60 | succinate | exodeoxyribonuclease III | 0491929 | chromosome 2 | 3423 | 17-1 | 11/30/2010 | P Box2 D2 |
Sp11-36-144 | D/L lactate | transcriptional regulator | 0519098-519090 | chromosome 2 | 3448 | 13-1, 17-1 | 6/13/2011 | P Box2 G7 |
Sp11-4-150 | D/L lactate | protein phosphatase 2C-like | 0568134 | chromosome 2 | 3492 | 17-1 | 6/23/2011 | P Box2 A6 |
Au10TR-35-2 | succinate | acetamidase/formamidase | 0587818 | chromosome 2 | 3508 | 17-1 | 11/30/2010 | P Box2 A5 |
SP10-7-41 (=SP10-8-37) | D/L lactate | putative adhesin or RTX toxin (2040 aa) | 0627995-628004 | chromosome 2 | 3540 | 13-2, 17-1 | 5/27/2010 | P Box1 H6 |
Au10MW-33-230 | succinate | dimethylglycine dehydrogenase | 0661547 | chromosome 2 | 3566 | 17-1 | 11/30/2010 | P Box2 B3 |
Au11-31-63 | D/L lactate | ZnuA, ABC zinc transporter, periplasmic binding protein | 0666948 | chromosome 2 | 3571 | 17-1 | 12/12/2011 | P Box3 A2 |
SP10-KL15-39 | D/L lactate | hypothetical protein (108 aa) | 0743017-743025 | chromosome 2 | 3631 | 13-2, 17-1 | 5/27/2010 | P Box1 I6 |
SP10-5-39 | D/L lactate | putative ExsB (207 aa) | 0750649-750657 | chromosome 2 | 3642 | 13-2, 17-1 | 5/27/2010 | P Box1 B7 |
Au12-316-13-5 | D/L lactate | metal dependent phosphohydrolase | 0751996 | chromosome 2 | 3644 | 17-1 | 12/13/2012 | P Box3 I4 |
Au10TR-31-14 | succinate | metal dependent phosphohydrolase | 0752175 | chromosome 2 | 3644 | 17-1 | 11/30/2010 | P Box2 B5 |
Au10TR-29-51 | succinate | metal dependent phosphohydrolase | 0752189-752198 | chromosome 2 | 3644 | 13-2, 17-1 | 11/30/2010 | P Box1 E6 |
Au09TR-25-180 | succinate | n/a | 0753439 (estimate) | chromosome 2 | n/a | iPCR | 11/30/2009 | P Box1 D7 |
Au11-37-223 | D/L lactate | hypothetical protein | 0753589 | chromosome 2 | 3645 | 17-1 | 12/12/2011 | P Box3 F1 |
Au11-08-11 | D/L lactate | n/a | 0753870 (estimate) | chromosome 2 | n/a | iPCR | 12/12/2011 | P Box3 H1 |
Sp11-10-92 | D/L lactate | intergenic region | 0755976 | chromosome 2 | n/a | 17-1 | 6/23/2011 | P Box2 B6 |
Au09MW-17-125 | succinate | hypothetical protein | 0786211 | chromosome 2 | 3669 | 13-2 | 11/30/2009 | P Box1 E7 |
Sp11-34-64 | D/L lactate | hypothetical protein | 0787413-0787404 | chromosome 2 | 3669 | 13-2, 17-1 | 8/9/2011 | P Box2 B1 |
Sp11-22-13 | D/L lactate | ABC sulfate/thiosulfate transporter, inner membrane subunit CysW | 0820837-0820849 | chromosome 2 | 3698 | 13-2, 17-1 | 7/8/2011 | P Box2 H8 |
Au09MW-20-57 | succinate | methyl-accepting chemotaxis protein (mcpJ) | 0831545-831554 | chromosome 2 | 3708 | 13-2, 17-1 | 11/30/2009 | P Box1 F7 |
Au12-332-14-191 | D/L lactate | capsular polysaccharide synthesis protein | 0842946 | chromosme 2 | 3719 | 17-1 | 12/13/2012 | P Box3 E3 |
Au09MW11-15 | succinate | hypothetical protein (569 aa) | 0851788-851796 | chromosome 2 | 3725 | 13-2, 17-1 | 11/30/2009 | P Box1 G7 |
Au09MW-27-59 | succinate | hypothetical protein | 0876048-876056 | chromosome 2 | 3750 | 13-2, 17-1 | 11/30/2009 | P Box1 H7 |
Au12-316-25-pig | D/L lactate | hypothetical protein | 0880724 | chromosome 2 | 3754 | 17-1 | 12/13/2012 | P Box H5 |
Sp11-34-241 | D/L lactate | hypothetical protein | 0882524 | chromosome 2 | 3756 | 17-1 | 6/23/2011 | P Box2 C6 |
Au10TR-43-11 | succinate | hypothetical protein | 0917601 | chromosome 2 | 3797 | 17-1 | 11/30/2010 | P Box2 I3 |
Au11-51-166 | D/L lactate | TRAP-T family transporter | 0935735 | chromosome 2 | 1418 | 17-1 | 12/12/2011 | P Box2 E9 |
SP10-OZ69 | D/L lactate | predicted O-linked acetylglucosamine transferase | 0019132-19123 | plasmid A | 3853 | 13-2, 17-1 | 5/27/2010 | P Box1 A9 |
Au11-26-39 | D/L lactate | predicted O-linked acetylglucosamine transferase | 0019730 | plasmid A | 3835 | 17-1 | 12/12/2011 | P Box3 G2 |
Au09MW-22-44 | succinate | cysA | 0030861-30870 | plasmid A | 3858 | 13-2, 17-1 | 11/30/2009 | P Box1 C8 |
Au10MW-4-2 (green) | succinate | sulfate/molybdate ABC transporter inner membrane protein | 0032305 | plasmid A | 3860 | 17-1 | 11/30/2010 | P Box2 E2 |
Au09TR-16-42 | succinate | sulfate/molybdate ABC transporter inner membrane protein | 0032775-32786 | plasmid A | 3860 | 13-2, 17-1 | 11/30/2009 | P Box1 D8 |
Au10MW-32-73 | succinate | BadM/Rrf2 family transcriptional regulator | 0035277 | plasmid A | 3865 | 17-1 | 11/30/2010 | P Box2 H2 |
SP10-32-08 | D/L lactate | modA, ABC molybdate transporter, periplasmic binding protein modA | 0041751 | plasmid A | 3871 | 17-1 | 05/27/2010 | P Box1 E8 |
SP10-4-36 | D/L lactate | modD, quinolinate phosphoribosyl transferase/putativemolybdenum utilization protein ModD | 0043275 | plasmid A | 3873 | 17-1 | 5/27/2010 | P Box1 F8 |
SP10-28-4 (green) | D/L lactate | hypothetical protein | 0066801-66809 | plasmid A | 7363 | 13-2, 17-1 | 5/27/2010 | P Box1 G8 |
Au10TR-20-36 = Sp11-JAA12-27 | succinate | intergenic region | 0068883 | plasmid A | n/a | 17-1 | 11/30/2010 | P Box2 F4 |
Au12-316-3-9 | D/L lactate | putative Mrr restriction system protein | 0069187 | plasmid A | 7364 | 17-1 | 12/13/2012 | P Box3 C5 |
Au09MW-14-39 | succinate | intergenic region | 0070293-70302 | plasmid A | n/a | 13-2, 17-1 | 11/30/2009 | P Box1 H8 |
Au10TR-7-184 | succinate | hypothetical protein | 0070962 | plasmid A | 3910 | 17-1 | 11/30/2010 | P Box2 F3 |
Sp11-8-68 | D/L lactate | hypothetical protein | 0077636-0077644 | plasmid A | 3904 | 13-2, 17-1 | 6/13/2011 | P Box 2 B8 |
Sp11-31-197 | D/L lactate | intergenic | 0084516 | plasmid A | n/a | 17-1 | 6/13/2011 | P Box2 A8 |
Sp11-19-111 | D/L lactate | just downstream of RSP_3926 NAD-dependent epimerase/dehydratase | 0101662 | plasmid A | n/a | 17-1 | 6/23/2011 | P Box2 B7 |
SP10-26-B9 | D/L lactate | intergenic region | 0107765 | plasmid A | n/a | 17-1 | 5/27/2010 | P Box1 I8 |
Sp11-8-184 | D/L lactate | intergenic region (upstream of RSP_7367) | 0017695 | plasmid B | n/a | 17-1 | 6/23/2011 | P Box2 I5 |
Au09TR-06-37 | succinate | proW, ABC Glycine betaine/L-proline transporter, inner membrane subunit | 0049184-49192 | plasmid B | 3999 | 13-2, 17-1 | 11/30/2009 | P Box1 B9 |
Au09MW-15-72 | succinate | n/a | 0049200 (estimate) | plasmid B | n/a | iPCR | 11/30/2009 | P Box1 C9 |
Sp11-15-114 | D/L lactate | short-chain dehydrogenase/reductase | 0081992 | plasmid B | 3972 | 17-1 | 6/23/2011 | P Box2 D6 |
Au10MW-10-132 | succinate | hypothetical protein | 0085188 | plasmid B | 3969 | 17-1 | 11/30/2010 | P Box2 I2 |
Au10MW-28-86 | succinate | hypothetical protein | 0106553 | plasmid B | 3946 | 17-1 | 11/30/2010 | P Box2 D3 |
Au10TR-4-37 | succinate | ABC sugar transporter, inner membrane subunit | 0108619 | plasmid B | 3943 | 17-1 | 11/30/2010 | P Box2 H4 |
SP10-BA46 | D/L lactate | H-NS family DNA-binding protein | 0008335-8343 | plasmid C | 7372 | 13-2, 17-1 | 5/27/2010 | P Box1 D9 |
Au12-316-7-237 | D/L lactate | intergenic | 0019736 | plasmid C | n/a | 17-1 | 12/13/2012 | P Box3 H4 |
Au09MW10-127 | succinate | n/a | 0019957-19966 | plasmid C | n/a | 13-2, 17-1 | 11/30/2009 | P Box1 E9 |
Sp11-35-109 | D/L lactate | intergenic | 0039325-0039341 | plasmid C | n/a | 13-2, 17-1 | 8/9/2011 | P Box2 B9 |
Au09TR-27-41 | succinate | putative colanic acid biosynthesis acetyltransferase WcaF | 0048347-48353 | plasmid C | 7375 | 13-2, 17-1 | 11/30/2009 | P Box1 F9 |
Au09MW-01-17 | succinate | n/a | 0051250 (estimate) | plasmid C | n/a | iPCR | 11/30/2009 | P Box1 G9 |
Sp11-26-81 | D/L lactate | hypothetical | 0052172-0052181 | plasmid C | 7376 | 13-2, 17-1 | 7/11/2011 | P Box2 B9 |
Au09MW-01-67 | succinate | gmd, NAD-dependent, epimerase/dehydrolase | 0065556-65565 | plasmid C | 4109 | 13-2, 17-1 | 11/30/2009 | P Box1 H9 |
Au09MW28-15 | succinate | n/a | 0067212 (estimate) | plasmid C | n/a | iPCR | 11/30/2009 | P Box1 I9 |
Au12-332-18-4 | D/L lactate | TraC, predicted ATPase (Walker motif) | 0070992 | plasmid D | 4226 | 17-1 | 12/13/2012 | P Box3 D3 |
Au12-332-14-167 | D/L lactate | YD repaet protein | 0029801 | plasmid E | 4284 | 17-1 | 12/13/2012 | P Box1 A8 |
Au12-316-19-125 | D/L lactate | 16SrRNA (one of two copies) | chromosome 2 | either 4347 or 4352 | 17-1 | 12/13/2012 | P Box3 G5 |