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Research Articles

Invited Publications, Book Chapters and Reviews

Books Edited

 

Research Articles (2003 – present)

Pourcel, L. Irani, NG, Lu, Y., Riedl, K., Schwartz, S., and Grotewold, E. (2010) The formation of anthocyanic vacuolar inclusions in Arabidopsis thaliana and implications for the sequestration of anthocyanin pigments. Molecular Plant, doi: 10.1093/mp/ssp071.

Lichtenberg, J., Yilmaz, A., Welch, J.D., Kurz, K., Liang, X., Drews, F., Ecker, K., Lee, S.S., Geisler, M., Grotewold E., and Welch, L.R. (2009) The word landscape of the non-coding segments of the Arabidopsis thaliana genome. BMC Genomics 10: 463.

Siegal-Gaskins, D,, Grotewold, E., and Smith, G.D. (2009) The capacity for multistability in small gene regulatory networks. BMC Syst Biol 3: 96.

Morohashi, K. and Grotewold, E. (2009) A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors. PLoS Genetics 5: e1000396.

Yilmaz, A., Nishiyama, M.Y., Garcia-Fuentes, B., Souza, G.M., Janies, D., Gray, J. and Grotewold, E. (2009) GRASSIUS: A platform for comparative regulatory genomics across the grasses. Plant Physiol. 149: 171-180.

Gray, J., Bevan, M., Brutnell, T., Buell, R., Cone, K., Hake, S., Jackson, D., Kellogg, E.A., Lawrence, C., McCouch, S., Mockler, T., Moose, S.P., Paterson, A., Peterson, T., Rokshar, D., Souza, G.M., Springer, N., Stein, N., Timmermans, M.C., Wang, G.-L., and Grotewold, E. (2009) A recommendation for naming transcription factor proteins in the grasses. Plant Physiol. 149: 4-6.

Xie, Z., and Grotewold, E. (2008) Serial ChIP as a tool to investigate the co-localization or exclusion of proteins on plant genes. Plant Methods 4: 25.

Zhao, M., Morohashi, K., Hatlestad, G., Grotewold, E. and Lloyd, A. (2008) The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci. Development 135: 1991-1999

Poustka, F., Irani, N.G., Feller, A., Lu, Y., Pourcel, L., Frame, K., Grotewold, E. (2007) A trafficking pathway for anthocyanins overlaps with the endoplasmic reticulum-to-vacuole protein sorting route in Arabidopsis and contributes to the formation of vacuolar inclusions. Plant Physiol. 145: 1323-1335.

Hernandez, J.M., Feller, A., Morohashi, K., Frame, K. and Grotewold, E. (2007) The bHLH domain of maize R links transcriptional regulation and histone modifications by recruitment of an EMSY-related factor. Proc. Natl. Acad. Sci. USA. 104: 17222-17227.

Morohashi, K., Zhao, M., Yang, M., Read, B., Lloyd, A., Lamb, R., and Grotewold, E. (2007) Participation of the Arabidopsis bHLH factor GL3 in trichome initiation regulatory events. Plant Physiol. 145: 736-746.

Nicholas, C., Batra, S., Vargo, M.A., Voss, O.H., Gavrilin, M., Wewers, M.D., Guttdridge, D.C., Grotewold, E., and Doseff, A.I. (2007) Apigenin blocks lipopolysaccharide-induced lethality in vivo and pro-inflammatory cytokines expression by inactivating NF-kB through the suppression of p65 phosphorylation. J. Immunol. 179: 7121-7127.

Heine, G.F., Malik, V., Dias, A.P., and Grotewold, E. (2007) Expression and molecular characterization of ZmMYB-IF35 and related R2R3-MYB transcription factors. Mol. Biotech. 37: 155-164.

Serpa, V., Vernal, J., Lamattina, L., Grotewold, E., Cassia, R., Terenzi, H. (2007) Inhibition of AtMYB2 DNA-binding by nitric oxide involves cysteine S-nitrosylation. Biochem. Biophys Res. Comm. 361: 1048-1053.

Cheng, L., Xu, Y., Grotewold, E., Jin, Z., Wu, F., Fu, C., and Zhao, D. (2007) Characterization of anthocyanidin synthase (ANS) gene and anthocyanidin in rare medicinal plant - Saussurea medusa. Plant Cell. Tiss. Organ Cult. 89: 63–73.

Feller, A., Hernandez, J.M., and Grotewold, E. (2006) An ACT domain participates in the dimerization of several plant bHLH transcription factors. J. Biol. Chem., Vol. 281, Issue 39, 28964-28974.

Vargo, M.A., Voss, O.H., Poustka, F., Cardounel, A.J., Grotewold, E., and Doseff, A.I. (2006) Apigenin-induced-apoptosis is mediated by the activation of PKC d and caspases in leukemia cells. Biochem. Pharmacol. 72: 681-92.

Palaniswamy, K., James, S., Sun, H., Lamb, R., Davuluri, R.V. and Grotewold, E. (2006) AGRIS and AtRegNet: A platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Phyisiol.140: 818-829.

Lu, Y., Irani, N.G., and Grotewold, E. (2005) Covalent attachment of the plant natural product naringenin to small glass and ceramic beads. BMC Chemical Biology 5: 3.

Jin, Z., Grotewold, E., Qu, W., Fu, G., and Zhao, D. (2005) Cloning and characterization of a flavanone 3-hydroxylase gene from Saussurea medusa. DNA Sequence 16: 121-129.

Irani, N.G., and Grotewold, E. (2005) Light-induced morphological alteration in anthocyanin-accumulating vacuoles of maize cells. BMC Plant Biology 5: 7.

Molina, C., and Grotewold, E. (2005) Genome-wide analysis of Arabidopsis core promoters. BMC Genomics 6: 25.

Grotewold, E. (2005) Plant metabolic diversity: A regulatory perspective. Trends Plant Sci. 10: 57-62.

Hernandez, J., Heine, G., Irani, N.G., Feller, A., Kim, M.-G., Matulnik, T., Chandler, V.L., and Grotewold, E. (2004) Different mechanisms participate in the R-dependent activity of the R2R3 MYB transcription factor C1.J. Biol. Chem. 279: 48205-48213.

Heine, G.F., Hernandez, J.M., and Grotewold, E. (2004) Two cysteines in plant R2R3 MYB domains participate in REDOX-dependent DNA binding. J. Biol. Chem. 279: 37878-37885.

Rangarajan, S., Raj, M.L.S., Hernandez, J.M., Grotewold, E., Gopalan, V. (2004) RnaseP as a tool for disrupting gene expression in maize cells. Biochem. J. 380: 611-616.

Henry, I.M., Wilkinson, M.D., Hernandez, J.M., Schwarz-Sommer, Z., Grotewold, E., and Mandoli, D.F. (2004) Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum. BMC Plant Biology 4: 3.1-3.15.

Lin, Y., Irani, N.G., and Grotewold, E. (2003) Sub-cellular trafficking of phytochemicals explored using auto-fluorescent compounds in maize cells. BMC Plant Biology 3: 10.1-10.12.

Davuluri, R.V., Sun, H., Palaniswamy, S.K., Matthews, N., Molina, C., Kurtz, M., and Grotewold , E. (2003) AGRIS: Arabidopsis Gene Regulatory Information Server , an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4: 25 – 35.

Dias, A.P., Braun, E.L., McMullen, M.D., and Grotewold, E. (2003) Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol. 131: 610-620.

Dias, A.P., and Grotewold, E. (2003) Manipulating the accumulation of phenolics in maize cultured cells using transcription factors. Biochem. Engineering J. 14: 207-216.

 

Invited Publications, Book Chapters and Reviews (1999-present)

Pourcel, L., and Grotewold, E. (2009) Phytochemicals, plant development and growth - Who is in control? In Plant-Derived Natural Products: Synthesis, Function and Application. Osbourn, A., and Lanzotti, V. (eds). Springer, New York, NY. Pp. 269-279.

Grotewold, E. and Gray, J. (2009) Maize transcription factors. In The Maize Handbook. Hake, S. and Bennetzen, J. (ed). Springer, New York, NY. Vol 2 pp. 693 - 714.

Morohashi, K., Xie, Z., and Grotewold, E. (2009) Gene-specific and genome-wide ChIP approaches to study plant transcriptional networks. Methods Mol Biol 553: 3-12.

Grotewold, E, and Springer, N. (2009) Decoding the transcriptional hardwiring of the plant genome. In Annual Plant Reviews: Systems Biology. Coruzzi, G. and Gutierrez, R. (eds). Blackwell Publishing. 35: 196-227.

Grotewold, E. (2008) Transcription factors for predictive plant metabolic engineering: Are we there yet? Curr. Opin. Biotech. 19: 138-144.

Grotewold, E., Davies, K. (2008) Trafficking and Sequestration of Anthocyanins. Nat. Prod. Comm. 3(8): 1251-1258.

Quattrocchio, F., Baudry, A., Lepiniec, L., and Grotewold, E. (2006) The regulation of flavonoid biosynthesis. In The Science of Flavonoids. Grotewold, E. (ed.) Springer, New York, NY. pp. 97-122.

Grotewold, E. (2006) The genetics and biochemistry of flower pigments. Ann. Rev. Plant Biol. 57:761–80.

Wurtzel, E.T., and Grotewold, E. (2006) Plant Metabolic Engineering. In Encyclopedia of Chemical Processing. Taylor & Francis. pp. 2192-2200.

Taylor, L. P., and Grotewold, E. (2005) Flavonoids as developmental regulators. Curr. Op. Plant Biol. 8: 317-323.

Onyilagha, J., and Grotewold, E. (2004) The biology and structural distribution of surface flavonoids. Recent Res. Devel. Plant Sci. 2: 53-71.

Grotewold, E. (2004) The challenges of moving chemicals within and out of cells: Insights into the transport of plant natural products. Planta 219: 906-909.

Pooma, W. and Grotewold, E. (2003) Transposons and the regulation of plant gene expression. Adv. Plant Physiol. 6: 37-58.

Dias, A., Brown, J., Bonello, P., and Grotewold, E. (2003) Metabolite profiling as a functional genomics tool. In Plant Functional Genomics: Methods & Protocols . Grotewold, E. (ed) Humana Press, NJ. pp. 415-426.

Irani, N., Hernandez, J.M., and Grotewold, E. (2003) Regulation of anthocyanin pigmentation. Recent Adv. Phytochem. 37: 59-78.

Walker, T.S., Bais, H.P., Grotewold,E. and Vivanco, J.M. (2003) Root exudation and rhizosphere biology. Plant Physiol. 132: 44-51.