PCMB 623
Plant Genetics and Genomics

Leaf epidermis showing jigsaw-puzzle shaped pavement cells and stomata
which allow gas
exchange between the leaf and the atmosphere. Scanning electron micrograph.
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Instructor - Dr. Randy Scholl
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Syllabus [pdf]
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Supplimental Materials
- Lecture 1 - EpistasisA [pdf]
- Discussion Problems - Epistasis [pdf]
- Lecture 2 - EpistasisB [pdf]
- Lecture 3 - Linkage [pdf]
- Paper List [pdf]
- Lecture 4 - F2 Linkage [pdf]
- Linkage Problems [pdf]
- Paper Presentation Schedule [pdf]
- Lecture 5 - RI Lines [pdf]
- Tables of the Recombination Fraction Estimated from the Production Ration
W.L. Stevens [pdf] - Midterm 1 Review [pdf]
- Gentic Linkage of the Arabidopsis Genome: Methods for mapping with recombinant inbreds and Random Amplified Polymorphic DNAs (RAPDs)
R.S. Reiter [pdf] - MapMakers Installation Guide [pdf]
- MapMaker User Guide [pdf]
- Corrected Formulas for Expected Class Frequencies - F2 Linkage [pdf]
- Answers – Selected Linkage Problems – PB 623 [pdf]
- Dean.txt
- deanRP.txt
- Lecture 6 - DNA Markers and RFLP[pdf]
- Lecture 7 - PCR Markers: CAPs, SSLPs, RADPs, dCAPs [pdf]
- Lecture 8 - AFLP (Amplified Fragment Length Polymorphism) [pdf]
- Midterm 2 Review [pdf]
- Lecture 9 - SNaPshot, Yeast Artificial Chromosomes (YACs) & Bacerial Artificial Chromosomes (BACs) [pdf]
- AFLP™ Fingerprinting of Arabidopsis. Pieter Vos [pdf]
- Building a High-Density Genetic Map using AFLP™ Technology. Martin T.R. Kuiper [pdf]
- Lecture 10 - T-DNA Transformation, T-DNA Tagging and Reverse Genetics with T-DNA and insertional mutants [pdf]
- Lecture 11 - Mutation [pdf]
- Lecture 12 - Transposon Tagging - Local Hopping [pdf]
- Lecture 13 - Insertion lines for reverse genetics – i.e., “sequence indexed” [pdf]
- Lecture 14 - Tilling [pdf]
- Midterm 3 Review [pdf]
- Lecture 15 - Plant Genome Sequences/Sequencing [pdf]
- Lecture 16 - Epigenetic Effects [pdf]
- Lecture 17 - Quantitative Genetics and Analysis of Quantitative Variation[pdf]
Revised: 1-dec-08
