The electropherogram demonstrates multiple peaks for each position, and the peaks are in phase with each other. For example, base 34 has a “T” peak under the “G” peak. This problem can be due to multiple templates, multiple priming sites or multiple primers. Below is a special case, multiple inserts, in which there are two different plasmids present that share the same vector (bases 1 – 33), but they have different inserts (bases 34 - 160). The solution is to separate the plasmids and resequence, e.g. restreaking the bacterial culture that contains the plasmids and then purify the plasmid again.

